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Protein purification: the step-by-step process

Protein purification is the processes of isolating a protein of interest from its environment. In other words, from the other natural molecules surrounding the proteins in the natural niche in a host organism, or from a cell culture grown in a laboratory. Our protein purification handbook  explains that there are several available techniques and many options to consider, but the general procedure is the same. 

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Magnetic beads vs Agarose beads: Advantages of Magnetic Agarose in Protein Purification

Most current protein purification methods use agarose beads carrying affinity functionalities such as IMAC, Glutathione, or antibodies. The choice of these functional groups depends on the protein of interest to be purified, and a large variety is available, including pre-functionalized beads that can be coupled to biomolecules (see SEPMAG® protein purification handbook chapter 4 and 5).

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The use of Biomagnetic Separation for improving iron oxide nanoparticles for magnetic particle imaging

Magnetic particle imaging (MPI) is a new technology that uses the signal generated by superparamagnetic tracers generated by changing magnetic fields. As it is not a natural superparamagnetic substance in the human tissues, the resultant images have no background. The tracers used in magnetic particle imaging are superparamagnetic iron oxide nanoparticles (SPIONs). The optimization of magnetic nanoparticles (MNP) plays an essential role to improve the image resolution and sensitivity of imaging techniques.

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The purpose of antibody dilution and how to do it

Antibodies are a key component to many biotechnical applications. They are most often used for immunoassays such as ELISA, cell and tissue staining, protein quantification such as western blot, and cutting edge sensor development. Verified antibodies are easily purchased from commercial vendors. These antibodies can be monoclonal or polyclonal, and can come as a lyophilized powder or as a premixed solution. All of these details must be considered when choosing which antibody to purchase because they all have an effect on the antibody concentration and dilution process. 

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Purification Systems

Chromatography systems, or purification systems can be used to purify protein, nucleic acids, or just peptides. It comes in different sizes for different scales of purification. Research labs often do purification in smaller batches and in industry settings companies do large scale purifications. The AKTA pure is an example of one such useful technology for automating the purification process, avoiding human errors, keeping the purification at a regulated temperature such as  if you put the machine in a colder environment for less stable molecules, and having a consistent and regulated amount of pressure applied to purification columns.

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mRNA purification

mRNA purification: how mRNA vaccines work

The letters “mRNA” are heard everywhere lately. The mRNA vaccine has been widely distributed in response to COVID-19. The mRNA in the vaccine enters cells in the body where the cell machinery can translate the mRNA into the Spike surface protein of the coronavirus. The body recognizes the spike protein as an antigen and produces antibodies against it. When infected with the actual virus later on, the immune system has a base defense system, antibodies, ready to more specifically remove virus.

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Bacterial Antigens

An antigen is defined as anything that causes an immune response in another organism. This immune response can be a simple increase of inflammatory factors, or it can be an activation of the adaptive immune system and creation of antibodies. Antibodies have two or more specific paratopes, or antigen recognition sites, that identify and combat the invading antigen. The number of antigen recognition sites is dependent on the antibody class. The word “antigen” can also refer to any protein of interest detected by a bioassay or biodetection platform. In the case of a bacterial antigen, we are referring to surface proteins, lipopolysaccharides, and peptidoglycans on the bacterial cell wall; these structures help bacteria invade other organisms by gaining access between epithelial cells. While surface structures help bacteria infect other organisms, they are also a detriment to the bacteria because they  also serve as a unique tag that antibodies and bacteriophages can recognize. Bacteriophages are viruses that attack bacteria. Both antibodies and phages are being used by scientists to develop new biodetection and biosensing platforms for rapid detection of bacterial antigens in the environment and in clinical samples.   

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Sonication cell lysis protocol

Cell lysis is the act of breaking the cell membrane to enable the study of specific proteins, nucleic acids, and other molecules inside of cells. When cell lysis is successful, the undamaged contents of the cell escape through the damaged cell membrane. These contents are then separated out of the mixed sample and used for further study. The methods used for separation of the lysed cell contents are dependent on the goal of the study. Careful investigation of these inner workings can reveal disease patterns, improve our understanding of normal cellular function, and elucidate biochemical pathways and therapeutic targets. Protein isolation is different from nucleic acid separation, and the reagents used vary drastically. There are a few ways to lyse the cell membrane; these include mechanical disruption, liquid homogenization, freeze/thaw cycles, manual griding, and the use of detergents. Sonication cell lysis is an example of mechanical disruption used for releasing the contents of cells.  

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Types of antigen

An antigen is a molecule that is part of an object that is foreign to the body. The body uses antibodies to recognize the foreign object by its antigens and stimulates an immune response, activating white blood cells to produce more antibodies and other immune pathways. Antigens can be proteins or sugars that are located on the outer surfaces of pathogenic cells. All cells have antigens including the ones inside the body, bacteria, and even viruses. The antibodies produced by the immune system are custom-fitted to the antigen that initially stimulated the immune response. The antibodies have an antigen recognition site (paratope) that is highly specific affinity for a region on the antigen called the epitope.  

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Protein Isolation protocol

A protein isolation protocol aims to safely and efficiently separate a protein that you are interested in from a mixture. Isolation of proteins is done from mammalian, insect, plant, yeast, or bacteria samples. 

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